build: allow node package depends on workspace packages (#11963)

<!-- This is an auto-generated comment: release notes by coderabbit.ai -->
## Summary by CodeRabbit

- **New Features**
  - Added a unified CLI entry point for server operations and introduced a new CLI executable alias.
  - Centralized and simplified server startup, allowing selection between CLI and server modes.
  - Added static migration module aggregation for easier migration management.

- **Bug Fixes**
  - Improved platform-specific native module loading for better compatibility and reliability.

- **Refactor**
  - Streamlined server build, startup, and artifact management processes.
  - Reorganized and simplified workflow and configuration files for backend services.
  - Transitioned export styles and import mechanisms for native modules to enhance maintainability.

- **Chores**
  - Removed unused dependencies and configuration files.
  - Updated test cases to reflect refined server flavor logic.
  - Adjusted package and build configurations for consistency and clarity.

- **Revert**
  - Removed legacy scripts and loaders no longer needed after refactor.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->

packages/backend/server/package.json

@@ -8,7 +8,7 @@
     "run-test": "./scripts/run-test.ts"
   },
   "scripts": {
-    "build": "tsc -b",
+    "build": "affine bundle -p @affine/server",
     "dev": "nodemon ./src/index.ts",
     "dev:mail": "email dev -d src/mails",
     "test": "ava --concurrency 1 --serial",
@@ -17,14 +17,16 @@
     "test:copilot:coverage": "c8 ava --timeout=5m \"src/__tests__/copilot-*.spec.ts\"",
     "e2e": "cross-env TEST_MODE=e2e ava --serial",
     "e2e:coverage": "cross-env TEST_MODE=e2e c8 ava --serial",
-    "data-migration": "cross-env NODE_ENV=development r ./src/data/index.ts",
+    "data-migration": "cross-env NODE_ENV=development SERVER_FLAVOR=script r ./src/index.ts",
     "init": "yarn prisma migrate dev && yarn data-migration run",
     "seed": "r ./src/seed/index.ts",
     "genconfig": "r ./scripts/genconfig.ts",
-    "predeploy": "yarn prisma migrate deploy && node --import ./scripts/register.js ./dist/data/index.js run",
+    "cli": "cross-env SERVER_FLAVOR=script node ./dist/main.js",
+    "predeploy": "yarn prisma migrate deploy && yarn cli run",
     "postinstall": "prisma generate"
   },
   "dependencies": {
+    "@affine/server-native": "workspace:*",
     "@ai-sdk/google": "^1.2.10",
     "@ai-sdk/openai": "^1.3.18",
     "@ai-sdk/perplexity": "^1.1.6",
@@ -72,6 +74,7 @@
     "ai": "^4.3.4",
     "bullmq": "^5.40.2",
     "cookie-parser": "^1.4.7",
+    "cross-env": "^7.0.3",
     "date-fns": "^4.0.0",
     "dotenv": "^16.4.7",
     "eventemitter2": "^6.4.9",
@@ -117,7 +120,6 @@
     "@affine-tools/cli": "workspace:*",
     "@affine-tools/utils": "workspace:*",
     "@affine/graphql": "workspace:*",
-    "@affine/server-native": "workspace:*",
     "@faker-js/faker": "^9.6.0",
     "@nestjs/testing": "patch:@nestjs/testing@npm%3A10.4.15#~/.yarn/patches/@nestjs-testing-npm-10.4.15-d591a1705a.patch",
     "@types/cookie-parser": "^1.4.8",
@@ -138,7 +140,6 @@
     "@types/supertest": "^6.0.2",
     "ava": "^6.2.0",
     "c8": "^10.1.3",
-    "cross-env": "^7.0.3",
     "nodemon": "^3.1.7",
     "react-email": "4.0.7",
     "sinon": "^20.0.0",