diff --git a/packages/backend/server/src/plugins/copilot/context/service.ts b/packages/backend/server/src/plugins/copilot/context/service.ts
index 47c618e81f..d705cda8ca 100644
--- a/packages/backend/server/src/plugins/copilot/context/service.ts
+++ b/packages/backend/server/src/plugins/copilot/context/service.ts
@@ -1,4 +1,5 @@
 import { Injectable, OnApplicationBootstrap } from '@nestjs/common';
+import { ModuleRef } from '@nestjs/core';
 
 import {
   Cache,
@@ -15,8 +16,6 @@ import {
   Models,
 } from '../../../models';
 import { type EmbeddingClient, getEmbeddingClient } from '../embedding';
-import { PromptService } from '../prompt';
-import { CopilotProviderFactory } from '../providers';
 import { ContextSession } from './session';
 
 const CONTEXT_SESSION_KEY = 'context-session';
@@ -27,10 +26,9 @@ export class CopilotContextService implements OnApplicationBootstrap {
   private client: EmbeddingClient | undefined;
 
   constructor(
+    private readonly moduleRef: ModuleRef,
     private readonly cache: Cache,
-    private readonly models: Models,
-    private readonly providerFactory: CopilotProviderFactory,
-    private readonly prompt: PromptService
+    private readonly models: Models
   ) {}
 
   @OnEvent('config.init')
@@ -44,7 +42,7 @@ export class CopilotContextService implements OnApplicationBootstrap {
   }
 
   private async setup() {
-    this.client = await getEmbeddingClient(this.providerFactory, this.prompt);
+    this.client = await getEmbeddingClient(this.moduleRef);
   }
 
   async onApplicationBootstrap() {
@@ -165,7 +163,7 @@ export class CopilotContextService implements OnApplicationBootstrap {
     );
     if (!fileChunks.length) return [];
 
-    return this.embeddingClient.reRank(content, fileChunks, topK, signal);
+    return await this.embeddingClient.reRank(content, fileChunks, topK, signal);
   }
 
   async matchWorkspaceDocs(
@@ -188,7 +186,48 @@ export class CopilotContextService implements OnApplicationBootstrap {
       );
     if (!workspaceChunks.length) return [];
 
-    return this.embeddingClient.reRank(content, workspaceChunks, topK, signal);
+    return await this.embeddingClient.reRank(
+      content,
+      workspaceChunks,
+      topK,
+      signal
+    );
+  }
+
+  async matchWorkspaceAll(
+    workspaceId: string,
+    content: string,
+    topK: number = 5,
+    signal?: AbortSignal,
+    threshold: number = 0.5
+  ) {
+    if (!this.embeddingClient) return [];
+    const embedding = await this.embeddingClient.getEmbedding(content, signal);
+    if (!embedding) return [];
+
+    const [fileChunks, workspaceChunks] = await Promise.all([
+      this.models.copilotWorkspace.matchFileEmbedding(
+        workspaceId,
+        embedding,
+        topK * 2,
+        threshold
+      ),
+      this.models.copilotContext.matchWorkspaceEmbedding(
+        embedding,
+        workspaceId,
+        topK * 2,
+        threshold
+      ),
+    ]);
+
+    if (!fileChunks.length && !workspaceChunks.length) return [];
+
+    return await this.embeddingClient.reRank(
+      content,
+      [...fileChunks, ...workspaceChunks],
+      topK,
+      signal
+    );
   }
 
   @OnEvent('workspace.doc.embed.failed')
diff --git a/packages/backend/server/src/plugins/copilot/controller.ts b/packages/backend/server/src/plugins/copilot/controller.ts
index 6ebfc44d30..a4e2d0e4fa 100644
--- a/packages/backend/server/src/plugins/copilot/controller.ts
+++ b/packages/backend/server/src/plugins/copilot/controller.ts
@@ -234,6 +234,7 @@ export class CopilotController implements BeforeApplicationShutdown {
         ...session.config.promptConfig,
         signal: this.getSignal(req),
         user: user.id,
+        workspace: session.config.workspaceId,
         reasoning,
         webSearch,
       });
@@ -304,6 +305,7 @@ export class CopilotController implements BeforeApplicationShutdown {
           ...session.config.promptConfig,
           signal: this.getSignal(req),
           user: user.id,
+          workspace: session.config.workspaceId,
           reasoning,
           webSearch,
         })
@@ -378,6 +380,7 @@ export class CopilotController implements BeforeApplicationShutdown {
           ...session.config.promptConfig,
           signal: this.getSignal(req),
           user: user.id,
+          workspace: session.config.workspaceId,
         })
       ).pipe(
         connect(shared$ =>
@@ -500,6 +503,7 @@ export class CopilotController implements BeforeApplicationShutdown {
             seed: this.parseNumber(params.seed),
             signal: this.getSignal(req),
             user: user.id,
+            workspace: session.config.workspaceId,
           }
         )
       ).pipe(
diff --git a/packages/backend/server/src/plugins/copilot/embedding/client.ts b/packages/backend/server/src/plugins/copilot/embedding/client.ts
index f2d4c7b6e9..d063b84555 100644
--- a/packages/backend/server/src/plugins/copilot/embedding/client.ts
+++ b/packages/backend/server/src/plugins/copilot/embedding/client.ts
@@ -1,4 +1,5 @@
 import { Logger } from '@nestjs/common';
+import type { ModuleRef } from '@nestjs/core';
 
 import {
   CopilotPromptNotFound,
@@ -193,12 +194,16 @@ class ProductionEmbeddingClient extends EmbeddingClient {
 
 let EMBEDDING_CLIENT: EmbeddingClient | undefined;
 export async function getEmbeddingClient(
-  providerFactory: CopilotProviderFactory,
-  prompt: PromptService
+  moduleRef: ModuleRef
 ): Promise<EmbeddingClient | undefined> {
   if (EMBEDDING_CLIENT) {
     return EMBEDDING_CLIENT;
   }
+  const providerFactory = moduleRef.get(CopilotProviderFactory, {
+    strict: false,
+  });
+  const prompt = moduleRef.get(PromptService, { strict: false });
+
   const client = new ProductionEmbeddingClient(providerFactory, prompt);
   if (await client.configured()) {
     EMBEDDING_CLIENT = client;
diff --git a/packages/backend/server/src/plugins/copilot/embedding/job.ts b/packages/backend/server/src/plugins/copilot/embedding/job.ts
index c7784ea07a..cc9381ddd2 100644
--- a/packages/backend/server/src/plugins/copilot/embedding/job.ts
+++ b/packages/backend/server/src/plugins/copilot/embedding/job.ts
@@ -1,4 +1,5 @@
 import { Injectable } from '@nestjs/common';
+import { ModuleRef } from '@nestjs/core';
 
 import {
   AFFiNELogger,
@@ -14,8 +15,6 @@ import {
 } from '../../../base';
 import { DocReader } from '../../../core/doc';
 import { Models } from '../../../models';
-import { PromptService } from '../prompt';
-import { CopilotProviderFactory } from '../providers';
 import { CopilotStorage } from '../storage';
 import { readStream } from '../utils';
 import { getEmbeddingClient } from './client';
@@ -31,12 +30,11 @@ export class CopilotEmbeddingJob {
   private client: EmbeddingClient | undefined;
 
   constructor(
+    private readonly moduleRef: ModuleRef,
     private readonly doc: DocReader,
     private readonly event: EventBus,
     private readonly logger: AFFiNELogger,
     private readonly models: Models,
-    private readonly providerFactory: CopilotProviderFactory,
-    private readonly prompt: PromptService,
     private readonly queue: JobQueue,
     private readonly storage: CopilotStorage
   ) {
@@ -57,7 +55,7 @@ export class CopilotEmbeddingJob {
     this.supportEmbedding =
       await this.models.copilotContext.checkEmbeddingAvailable();
     if (this.supportEmbedding) {
-      this.client = await getEmbeddingClient(this.providerFactory, this.prompt);
+      this.client = await getEmbeddingClient(this.moduleRef);
     }
   }
 
diff --git a/packages/backend/server/src/plugins/copilot/prompt/prompts.ts b/packages/backend/server/src/plugins/copilot/prompt/prompts.ts
index 086feac1a1..b9d9bd7246 100644
--- a/packages/backend/server/src/plugins/copilot/prompt/prompts.ts
+++ b/packages/backend/server/src/plugins/copilot/prompt/prompts.ts
@@ -1791,7 +1791,13 @@ Below is the user's query. Please respond in the user's preferred language witho
     },
   ],
   config: {
-    tools: ['webSearch'],
+    tools: [
+      'readDoc',
+      'editDoc',
+      'webSearch',
+      'keywordSearch',
+      'semanticSearch',
+    ],
   },
 };
 
diff --git a/packages/backend/server/src/plugins/copilot/providers/anthropic/anthropic.ts b/packages/backend/server/src/plugins/copilot/providers/anthropic/anthropic.ts
index 1fd22d6aac..25fc1f863b 100644
--- a/packages/backend/server/src/plugins/copilot/providers/anthropic/anthropic.ts
+++ b/packages/backend/server/src/plugins/copilot/providers/anthropic/anthropic.ts
@@ -10,7 +10,6 @@ import {
   metrics,
   UserFriendlyError,
 } from '../../../../base';
-import { createExaCrawlTool, createExaSearchTool } from '../../tools';
 import { CopilotProvider } from '../provider';
 import type {
   CopilotChatOptions,
@@ -68,7 +67,7 @@ export abstract class AnthropicProvider<T> extends CopilotProvider<T> {
         providerOptions: {
           anthropic: this.getAnthropicOptions(options, model.id),
         },
-        tools: this.getTools(),
+        tools: await this.getTools(options, model.id),
         maxSteps: this.MAX_STEPS,
         experimental_continueSteps: true,
       });
@@ -103,7 +102,7 @@ export abstract class AnthropicProvider<T> extends CopilotProvider<T> {
         providerOptions: {
           anthropic: this.getAnthropicOptions(options, model.id),
         },
-        tools: this.getTools(),
+        tools: await this.getTools(options, model.id),
         maxSteps: this.MAX_STEPS,
         experimental_continueSteps: true,
       });
@@ -123,13 +122,6 @@ export abstract class AnthropicProvider<T> extends CopilotProvider<T> {
     }
   }
 
-  private getTools() {
-    return {
-      web_search_exa: createExaSearchTool(this.AFFiNEConfig),
-      web_crawl_exa: createExaCrawlTool(this.AFFiNEConfig),
-    };
-  }
-
   private getAnthropicOptions(options: CopilotChatOptions, model: string) {
     const result: AnthropicProviderOptions = {};
     if (options?.reasoning && this.isReasoningModel(model)) {
diff --git a/packages/backend/server/src/plugins/copilot/providers/openai.ts b/packages/backend/server/src/plugins/copilot/providers/openai.ts
index 3e3f3a3f74..a1495663da 100644
--- a/packages/backend/server/src/plugins/copilot/providers/openai.ts
+++ b/packages/backend/server/src/plugins/copilot/providers/openai.ts
@@ -11,7 +11,7 @@ import {
   generateObject,
   generateText,
   streamText,
-  ToolSet,
+  Tool,
 } from 'ai';
 import { z } from 'zod';
 
@@ -21,10 +21,10 @@ import {
   metrics,
   UserFriendlyError,
 } from '../../../base';
-import { createExaCrawlTool, createExaSearchTool } from '../tools';
 import { CopilotProvider } from './provider';
 import type {
   CopilotChatOptions,
+  CopilotChatTools,
   CopilotEmbeddingOptions,
   CopilotImageOptions,
   CopilotStructuredOptions,
@@ -248,25 +248,14 @@ export class OpenAIProvider extends CopilotProvider<OpenAIConfig> {
     }
   }
 
-  private getTools(options: CopilotChatOptions, model: string): ToolSet {
-    const tools: ToolSet = {};
-    if (options?.tools?.length) {
-      for (const tool of options.tools) {
-        switch (tool) {
-          case 'webSearch': {
-            if (this.isReasoningModel(model)) {
-              tools.web_search_exa = createExaSearchTool(this.AFFiNEConfig);
-              tools.web_crawl_exa = createExaCrawlTool(this.AFFiNEConfig);
-            } else {
-              tools.web_search_preview = openai.tools.webSearchPreview();
-            }
-            break;
-          }
-        }
-      }
-      return tools;
+  override getProviderSpecificTools(
+    toolName: CopilotChatTools,
+    model: string
+  ): [string, Tool] | undefined {
+    if (toolName === 'webSearch' && !this.isReasoningModel(model)) {
+      return ['web_search_preview', openai.tools.webSearchPreview()];
     }
-    return tools;
+    return;
   }
 
   async text(
@@ -297,7 +286,7 @@ export class OpenAIProvider extends CopilotProvider<OpenAIConfig> {
         providerOptions: {
           openai: this.getOpenAIOptions(options, model.id),
         },
-        tools: this.getTools(options, model.id),
+        tools: await this.getTools(options, model.id),
         maxSteps: this.MAX_STEPS,
         abortSignal: options.signal,
       });
@@ -338,7 +327,7 @@ export class OpenAIProvider extends CopilotProvider<OpenAIConfig> {
         providerOptions: {
           openai: this.getOpenAIOptions(options, model.id),
         },
-        tools: this.getTools(options, model.id),
+        tools: await this.getTools(options, model.id),
         maxSteps: this.MAX_STEPS,
         abortSignal: options.signal,
       });
diff --git a/packages/backend/server/src/plugins/copilot/providers/provider.ts b/packages/backend/server/src/plugins/copilot/providers/provider.ts
index a8a3150503..e5d700d40f 100644
--- a/packages/backend/server/src/plugins/copilot/providers/provider.ts
+++ b/packages/backend/server/src/plugins/copilot/providers/provider.ts
@@ -1,4 +1,6 @@
 import { Inject, Injectable, Logger } from '@nestjs/common';
+import { ModuleRef } from '@nestjs/core';
+import { Tool, ToolSet } from 'ai';
 import { z } from 'zod';
 
 import {
@@ -7,9 +9,18 @@ import {
   CopilotProviderNotSupported,
   OnEvent,
 } from '../../../base';
+import { AccessController } from '../../../core/permission';
+import { CopilotContextService } from '../context';
+import {
+  buildDocSearchGetter,
+  createExaCrawlTool,
+  createExaSearchTool,
+  createSemanticSearchTool,
+} from '../tools';
 import { CopilotProviderFactory } from './factory';
 import {
   type CopilotChatOptions,
+  CopilotChatTools,
   type CopilotEmbeddingOptions,
   type CopilotImageOptions,
   CopilotProviderModel,
@@ -33,6 +44,7 @@ export abstract class CopilotProvider<C = any> {
 
   @Inject() protected readonly AFFiNEConfig!: Config;
   @Inject() protected readonly factory!: CopilotProviderFactory;
+  @Inject() protected readonly moduleRef!: ModuleRef;
 
   get config(): C {
     return this.AFFiNEConfig.copilot.providers[this.type] as C;
@@ -98,6 +110,49 @@ export abstract class CopilotProvider<C = any> {
     );
   }
 
+  protected getProviderSpecificTools(
+    _toolName: CopilotChatTools,
+    _model: string
+  ): [string, Tool] | undefined {
+    return;
+  }
+
+  // use for tool use, shared between providers
+  protected async getTools(
+    options: CopilotChatOptions,
+    model: string
+  ): Promise<ToolSet> {
+    const tools: ToolSet = {};
+    if (options?.tools?.length) {
+      for (const tool of options.tools) {
+        const toolDef = this.getProviderSpecificTools(tool, model);
+        if (toolDef) {
+          tools[toolDef[0]] = toolDef[1];
+          continue;
+        }
+        switch (tool) {
+          case 'webSearch': {
+            tools.web_search_exa = createExaSearchTool(this.AFFiNEConfig);
+            tools.web_crawl_exa = createExaCrawlTool(this.AFFiNEConfig);
+            break;
+          }
+          case 'semanticSearch': {
+            const ac = this.moduleRef.get(AccessController, { strict: false });
+            const context = this.moduleRef.get(CopilotContextService, {
+              strict: false,
+            });
+            const searchDocs = buildDocSearchGetter(ac, context);
+            tools.semantic_search = createSemanticSearchTool(
+              searchDocs.bind(null, options)
+            );
+          }
+        }
+      }
+      return tools;
+    }
+    return tools;
+  }
+
   private handleZodError(ret: z.SafeParseReturnType<any, any>) {
     if (ret.success) return;
     const issues = ret.error.issues.map(i => {
diff --git a/packages/backend/server/src/plugins/copilot/providers/types.ts b/packages/backend/server/src/plugins/copilot/providers/types.ts
index c541351a2a..eb5bb20c6b 100644
--- a/packages/backend/server/src/plugins/copilot/providers/types.ts
+++ b/packages/backend/server/src/plugins/copilot/providers/types.ts
@@ -57,7 +57,21 @@ export const VertexSchema: JSONSchema = {
 // ========== prompt ==========
 
 export const PromptConfigStrictSchema = z.object({
-  tools: z.enum(['webSearch']).array().nullable().optional(),
+  tools: z
+    .enum([
+      // work with morph
+      'editDoc',
+      // work with exa/model internal tools
+      'webSearch',
+      // work with indexer
+      'readDoc',
+      'keywordSearch',
+      // work with embeddings
+      'semanticSearch',
+    ])
+    .array()
+    .nullable()
+    .optional(),
   // params requirements
   requireContent: z.boolean().nullable().optional(),
   requireAttachment: z.boolean().nullable().optional(),
@@ -121,6 +135,7 @@ export type PromptParams = NonNullable<PromptMessage['params']>;
 const CopilotProviderOptionsSchema = z.object({
   signal: z.instanceof(AbortSignal).optional(),
   user: z.string().optional(),
+  workspace: z.string().optional(),
 });
 
 export const CopilotChatOptionsSchema = CopilotProviderOptionsSchema.merge(
@@ -133,6 +148,9 @@ export const CopilotChatOptionsSchema = CopilotProviderOptionsSchema.merge(
   .optional();
 
 export type CopilotChatOptions = z.infer<typeof CopilotChatOptionsSchema>;
+export type CopilotChatTools = NonNullable<
+  NonNullable<CopilotChatOptions>['tools']
+>[number];
 
 export const CopilotStructuredOptionsSchema =
   CopilotProviderOptionsSchema.merge(PromptConfigStrictSchema).optional();
diff --git a/packages/backend/server/src/plugins/copilot/providers/utils.ts b/packages/backend/server/src/plugins/copilot/providers/utils.ts
index f98654c839..25b6312611 100644
--- a/packages/backend/server/src/plugins/copilot/providers/utils.ts
+++ b/packages/backend/server/src/plugins/copilot/providers/utils.ts
@@ -9,7 +9,11 @@ import {
 } from 'ai';
 import { ZodType } from 'zod';
 
-import { createExaCrawlTool, createExaSearchTool } from '../tools';
+import {
+  createExaCrawlTool,
+  createExaSearchTool,
+  createSemanticSearchTool,
+} from '../tools';
 import { PromptMessage } from './types';
 
 type ChatMessage = CoreUserMessage | CoreAssistantMessage;
@@ -378,6 +382,7 @@ export class CitationParser {
 export interface CustomAITools extends ToolSet {
   web_search_exa: ReturnType<typeof createExaSearchTool>;
   web_crawl_exa: ReturnType<typeof createExaCrawlTool>;
+  semantic_search: ReturnType<typeof createSemanticSearchTool>;
 }
 
 type ChunkType = TextStreamPart<CustomAITools>['type'];
@@ -424,6 +429,12 @@ export class TextStreamParser {
       case 'tool-result': {
         result = this.addPrefix(result);
         switch (chunk.toolName) {
+          case 'semantic_search': {
+            if (Array.isArray(chunk.result)) {
+              result += `\nFound ${chunk.result.length} document${chunk.result.length !== 1 ? 's' : ''} related to “${chunk.args.query}”.\n`;
+            }
+            break;
+          }
           case 'web_search_exa': {
             if (Array.isArray(chunk.result)) {
               result += `\n${this.getWebSearchLinks(chunk.result)}\n`;
diff --git a/packages/backend/server/src/plugins/copilot/tools/index.ts b/packages/backend/server/src/plugins/copilot/tools/index.ts
index af14d9ae45..cde30ce1ed 100644
--- a/packages/backend/server/src/plugins/copilot/tools/index.ts
+++ b/packages/backend/server/src/plugins/copilot/tools/index.ts
@@ -1 +1,2 @@
+export * from './semantic-search';
 export * from './web-search';
diff --git a/packages/backend/server/src/plugins/copilot/tools/semantic-search.ts b/packages/backend/server/src/plugins/copilot/tools/semantic-search.ts
new file mode 100644
index 0000000000..9e654c4a92
--- /dev/null
+++ b/packages/backend/server/src/plugins/copilot/tools/semantic-search.ts
@@ -0,0 +1,45 @@
+import { tool } from 'ai';
+import { z } from 'zod';
+
+import type { AccessController } from '../../../core/permission';
+import type { ChunkSimilarity } from '../../../models';
+import type { CopilotContextService } from '../context';
+import type { CopilotChatOptions } from '../providers';
+
+export const buildDocSearchGetter = (
+  ac: AccessController,
+  context: CopilotContextService
+) => {
+  const searchDocs = async (options: CopilotChatOptions, query?: string) => {
+    if (!options || !query?.trim() || !options.user || !options.workspace) {
+      return undefined;
+    }
+    const canAccess = await ac
+      .user(options.user)
+      .workspace(options.workspace)
+      .can('Workspace.Read');
+    if (!canAccess) return undefined;
+    const chunks = await context.matchWorkspaceAll(options.workspace, query);
+    return chunks || undefined;
+  };
+  return searchDocs;
+};
+
+export const createSemanticSearchTool = (
+  searchDocs: (query: string) => Promise<ChunkSimilarity[] | undefined>
+) => {
+  return tool({
+    description:
+      'Semantic search for relevant documents in the current workspace',
+    parameters: z.object({
+      query: z.string().describe('The query to search for.'),
+    }),
+    execute: async ({ query }) => {
+      try {
+        return await searchDocs(query);
+      } catch {
+        return 'Failed to search documents.';
+      }
+    },
+  });
+};