feat(native): sync yocto codes (#14243)

#### PR Dependency Tree


* **PR #14243** 👈

This tree was auto-generated by
[Charcoal](https://github.com/danerwilliams/charcoal)

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## Summary by CodeRabbit

* **New Features**
* Batch management API for coordinated document mutations and change
tracking.
* New document accessors (IDs, state snapshots, change/delete set
queries) and subscriber count.

* **Chores**
  * Upgraded Rust edition across packages to 2024.
  * Repository-wide formatting, stylistic cleanups and test adjustments.

* **Breaking Changes**
* Removed the Node native bindings package and its JS/TS declarations
and tests (no longer published/available).

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settings.</sub>
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tsconfig.json

@@ -132,7 +132,6 @@
     { "path": "./packages/common/infra" },
     { "path": "./packages/common/nbstore" },
     { "path": "./packages/common/reader" },
-    { "path": "./packages/common/y-octo/node" },
     { "path": "./packages/frontend/admin" },
     { "path": "./packages/frontend/apps/android" },
     { "path": "./packages/frontend/apps/electron" },