chore: bump deps (#14065)

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## Summary by CodeRabbit

* **Chores**
* Updated dependency versions across the monorepo (notably zod →
^3.25.76 and vitest-related packages → ^3.2.4), plus minor package bumps
to align tooling and libraries. These are manifest/test-tooling updates
only; no public API, behavior, or end-user features were changed.

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packages/common/nbstore/package.json

@@ -37,7 +37,7 @@
     "fake-indexeddb": "^6.0.0",
     "idb": "^8.0.0",
     "socket.io-client": "^4.8.1",
-    "vitest": "3.1.3"
+    "vitest": "^3.2.4"
   },
   "peerDependencies": {
     "@affine/error": "workspace:*",