chore: bump deps (#14065)

<!-- This is an auto-generated comment: release notes by coderabbit.ai
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## Summary by CodeRabbit

* **Chores**
* Updated dependency versions across the monorepo (notably zod →
^3.25.76 and vitest-related packages → ^3.2.4), plus minor package bumps
to align tooling and libraries. These are manifest/test-tooling updates
only; no public API, behavior, or end-user features were changed.

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packages/common/infra/package.json

@@ -29,7 +29,7 @@
     "nanoid": "^5.0.9",
     "react": "19.1.0",
     "yjs": "^13.6.21",
-    "zod": "^3.24.1"
+    "zod": "^3.25.76"
   },
   "devDependencies": {
     "@affine/templates": "workspace:*",
@@ -39,7 +39,7 @@
     "@types/react": "^19.0.1",
     "fake-indexeddb": "^6.0.0",
     "rxjs": "^7.8.1",
-    "vitest": "3.1.3"
+    "vitest": "^3.2.4"
   },
   "peerDependencies": {
     "electron": "*",